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2009/12/14
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Jiawei
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2009/12/07
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Don
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2009/11/30
|
Chuck
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2009/11/23
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Xingbin
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2009/11/30
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Jiawei
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2009/11/23
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Don
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2009/11/16
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Chuck
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2009/11/09
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Xingbin
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2009/11/02
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Jiawei
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2009/10/26
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Don
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2009/10/19
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Chuck
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2009/10/05
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Xingbin
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Asymptotic property of
EVC estimator
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2009/09/28
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Don
|
Meta-analysis for integrated data exploratory tools
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2009/08/31
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Chuck
|
Generalized Singular Value Decomposition (GSVD)
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2009/08/27
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Xingbin
|
EVC: Inferring the True correlation of Cross-Species
Microarray Data
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2009/08/20
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Don
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Meta-Clustering & Meta-PCA
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2009/08/13
|
Kui
|
Defense rehearsal
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2009/07/30
|
Chuck
|
Cell Cycle Paper Review
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2009/07/23
|
Kui
|
Defense rehearsal
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2009/07/16
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Xingbin
|
ABO: Asymptotically Bahadur Optimal Property of OW
method
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2009/07/09
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Shuya
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Defense rehearsal
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2009/6/11
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Sunghee
|
Defense rehearsal
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2009/6/4
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Shuya
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6/4 R PACKAGES FOR DATA QUALITY EVALUATION AND
RETRIEVAL OF MICROARRY STUDIES
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2009/5/28
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Chuck
|
Paper review:
Sunita R. Setlur et al. 2007
Sridhar Ramaswamy et al. 2002
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2009/5/14
|
Kui
|
Combining multiple microarray studies for improved
pathway analysis
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2009/5/7
|
Xingbin
|
Asymtotically Optimal Methods of Combining Tests
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2009/4/28
|
Sunghee
|
Effects of missing value imputation on down-stream
analyses in microarray data
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2009/4/21
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Chuck
|
GSEA algorithm
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2009/4/13
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Shuya
|
R function for merging microarray data sets and Data
quality control
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2009/3/23
|
Kui
|
Combining multiple microarray studies for improved
pathway analysis
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|
|
|
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2009/3/16
|
Xingbin
|
Asymtotically Optimal Methods of Combining Tests
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2009/3/2
|
Sunghee
|
The effects of missing value imputation on down-stream
analyses of microarray data
|
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2009/2/2
|
Chuck
|
Tight Clustering R package
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2009/1/26
|
Shuya
|
Data collection package and biomarkers detection for a
real cancer data.
|
|
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2009/1/12
|
Kui
|
Combining multiple microarray studies for improved
pathway analysis
|
|
|
2009/1/5
|
George
|
Overview the projects and research direction
|
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2008/12/15
|
Xingbin
|
Estimating the true correlation in a contaminated
bivariate Gaussian model: via extreme value correlation
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2008/12/8
|
Sunghee
|
Rehearsal for proposal
|
|
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2008/11/17
|
Kui
|
Combining multiple microarray studies for improved
pathway analysis
|
|
|
|
|
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2008/11/10
|
Shuya
|
Review paper:
Large-scale meta-analysis of cancer microarray data identifies common transcriptional
profiles of neoplastic transformation and progrssion Rhodes DR et
al.(2004)PNAS.
Detecting common gene expression pattens in multiple cancer outcome
entities. Yang X et al.(2005)Biomedical Microdevices.
|
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2008/11/03
|
Chuck
|
Rearranged Ions in Mass Spectrometry Research
|
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|
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|
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2008/10/27
|
Sunghee
|
Effects of missing imputation on various down-stream
analyses in microarray experiments
|
|
|
|
|
|
|
2008/10/20
|
Xingbin
|
Estimating the true correlation in a contaminated
bivariate Gussian model via extreme value correlation
|
|
|
2008/10/06
|
Zhibao
|
Dimension Reduction and Robust Classification Models
in the Disease Prediction by Genomic and Cell-based Assays
|
|
|
2008/09/29
|
Kui
|
Review paper:
Meta- and Gene set analysis of stomach cancer gene expession
data,Seon-Young Kim et al., Mol. Cells, Vol.24, No.2, p.200-209
|
|
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2008/09/22
|
Shuya
|
Biomarker Detection methods when combining multiple multi-class
mircoarrays studies
|
|
|
2008/09/15
|
Xingbin
|
Estimating the true correlation in a contaminated
bivariate Gaussian model:via extreme value correlation
|
|
|
2008/09/08
|
Sunghee
|
The effects on identifying the significant genes to various
MVs imputation methods
|
|
|
2008/09/02
|
Kui
|
Rehearsal for proposal
|
|
|
08/8/25
|
Kui
|
Combining multiple microarray studies for improved
pathway analysis
|
|
|
08/8/18
|
Shuya
|
Identifying Biomarkers of Concordant Patterns in the Meta-Analylsis
of multilple multi-class microarray studies
|
|
|
08/8/11
|
Sunghee
|
The effects on identifying the significant genes to
various missing values(MVs) imputation methods
|
|
|
08/8/05
|
Xingbin
|
Estimating the true correlation in a contaminated
bivariate Gaussian model:via extreme value correlation
|
|
|
|
|
|
|
08/7/28
|
Zhibao
|
MBP Project Update
|
|
|
08/6/30
|
Kui
|
Identifying alternative pathway using Fisher Exact
Test
|
|
|
08/6/23
|
Shuya
|
Review paper:
Regularized biomarker selection in mircroarray meta-analysis,
Shuangge Ma et al,Technical Report No.383
|
|
|
08/6/09
|
Sunghee
|
The effects on identifying the significant genes to
various missing values(MVs) imputation methods
|
|
|
08/5/19
|
Zhibao
|
Module-based prediction in microarray data(MBP)
|
|
|
08/5/12
|
Kui
|
Module Enrichment Meta-analysis of Microarray Data
|
|
|
08/5/5
|
Shuya
|
Identifying biomarkers of concordant correlated
patterns across microarray studies
|
|
|
08/4/21
|
Sunghee
|
Review paper:
DNA microarray data imputation and significance analysis of differential
expression, Jornsten et al, Bioinformatics, p.4155-4161.
|
|
|
08/4/14
|
Zhibao
|
Rehearsal for proposal
|
|
|
08/4/07
|
Chunrong
|
Review paper:
Metagene projection for cross-platform, cross species characterization of
global transcriptional states,Tamayo et al, PNAS, p.5959-5964.
|
|
|
08/3/24
|
NIH meeting
|
Group meeting cancelled
|
|
|
08/3/17
|
ENAR
|
Group meeting cancelled
|
|
|
08/3/10
|
Spring break
|
Group meeting cancelled
|
|
|
08/3/03
|
Jia
|
Review paper:
Pearson's Test in a Large Scale Multiple Meta-Anlysis, Art B.Owen
|
|
|
08/2/25
|
Shuya
|
1.Identifying genes with correlated patterns across
studies
2.Review workshop from HBLS Bioinformatics:Protein Information Hubs
|
|
|
08/2/18
|
Kui
|
A tutorial for making a R package in Windows
|
|
|
08/2/11
|
Zhibao
|
Module based robust prediction
|
|
|
08/2/04
|
Sunghee
|
Estimating the true correlation in a contaminated
bivariate Gaussian model : via extreme value correlation
|
|
|
08/1/28
|
Kui
|
Multi-resolution classification
|
|
|
07/11/20
|
Chunrong
Jia
|
rehearsal for proposals
|
|
|
07/11/13
|
Shuya
|
identifying correlated genes across studies
|
|
|
07/11/6
|
Zhibao
|
module-based prediction model
|
|
|
07/10/30
|
Jia
|
Meta-analysis of microarray data
|
|
|
07/10/23
|
Chunrong
|
cross-platform prediction
|
|
|
07/10/16
|
Sunghee
|
Correlation of extreme values
|
|
|
07/10/2
|
Kui
|
Multi-resolution clustering
|
|
|
07/9/25
|
Shuya
|
Review paper:
Optimized cross-study analysis of microarray based predictors,X.Zhong et
al.
|
|
|
07/9/18
|
Zhibao
|
module-based prediction model
|
|
|
07/9/11
|
Jia
|
meta-analysis in microarray
|
|
|
07/9/4
|
Chunrong
|
cross-dataset prediction and improved DE gene
detection method
|
|
|
07/8/27
|
Sunghee
|
extreme value correlation and identify correlated
genes across species
|
|
|
07/8/20
|
George
|
evolution of gene identifiers and issues in gene
matching across data sets
|
|
|
07/8/13
|
Kui Shen
|
improved tight clustering/multi-resolution clustering
|
|
|
07/8/6
|
Sunghee
|
extreme value correlation and identify correlated
genes across species
|
|
|
07/7/16
|
Jia Li
|
meta-analysis in microarray
|
|
|
07/7/9
|
Zhibao
|
robust prediction in microarray
|
|
|
07/7/2
|
Chunrong
|
cross-dataset prediction in microarray
|
|
|
07/5/18
|
Sunghee
|
The connectivity Map: Using Gene-Expression Signatures
to Connect Small Molecules, Genes and Disease. Science. 2006
|
|
|
07/5/11
|
Chunrong
|
From signature to models: understanding cancer using
microarrays. Nature Genetics. 2005
|
|
|
07/5/4
|
Jia
|
A module map showing conditional activity of expression
modules in cancer. Nature Genetics. 2004
|
|
|
07/4/13
|
Sunghee
|
analysis on human and mouse depression; simulation on
extreme correlation
|
|
|
07/4/6
|
Zhibao
|
a robust prediction method
|
|
|
07/3/30
|
Joshua
|
preparing microarray data packages and annotations in
Bioconductor
|
|
|
07/3/23
|
Jia
|
update on meta-analysis project
|
|
|
07/2/16
|
Joshua
|
Review paper: Bayesian models for pooling microarray
studies with multiple sources of replications.
|
|
|
07/2/9
|
George
|
Quantile map: visualizing and summarizing patterns of
multiple distributions with Fisher information and empirical Bayes.
|
|
|
07/2/2
|
Chunrong
|
Review paper: Cross-platform analysis of cancer
microarray data improves gene expression based classification of
phenotypes.
|
|
|
07/1/26
|
Sunghee
|
Review paper: Large-scale meta-analysis of cancer
microarray data identifies common transcriptional profiles of neoplastic
transformation and progression.
|
|
|
07/1/19
|
Jia
|
Review paper: Statistical issues and methods for
meta-analysis of microarray data: a case study in prostate cancer.
Meta-analysis ofmicroarrays: interstudy validation of gene expression
profiles reveals pathway dysregulation in prostate cancer.
|
|
|
06/12/18
|
Jia
Sunghee
|
Review NBT MAQC paper: Using RNA sample titrations to
assess microarray platform performance and normalization techniques.
review NBT MAQC paper: Evaluation of DNA microarray results with
quantitative gene expression platforms.
|
|
|
06/11/27
|
George
|
Statistical integrative analysis of multiple
expression profiles
review NAR paper (Chunrong): Evaluation of gene expression measurements
from commercial microarray platforms.
|
|
|
06/11/20
|
Zhibao
|
update on KNN.e imputation
review NBT MAQC paper (George): The MicroArray Quality Control (MAQC)
project shows inter- and intraplatform reproducibility of gene expression
measurements
|
|
|
06/11/06
|
Jia
|
gene selection in classification of microarray data
|
|
|
06/10/30
|
Sunghee
|
Metastasis of ovarian and endometrial cancer in
expression profiles
|
|
|
06/10/16
|
Chunrong
|
Cross-organ classification analysis on expression
profiles of liver and prostate cancer
|
|
|
06/10/02
|
George
|
Selection of missing value imputation methods in
microarray
|
|
|
06/09/25
|
Jia
|
Increasingly exhaustive gene/covariate selection
|
|
|
06/09/18
|
Chunrong
|
KNN-SAM
|
|
|
06/09/11
|
Zhibao
|
Correlation-based KNN in missing value imputation
|
|
|
06/08/30
|
Sunghee
|
Analysis of human depression data
|
|
|
06/08/03
|
Chunrong
|
Meta-analysis on prostate and lung cancer data
|
|
|
06/07/13
|
George
|
Summary of all projects. Penalized and weighted
K-means.
|
|
